Deep Learning-Based Virtual Histopathology Staining of Stimulated Raman Scattering Microscopy
- 👤 Speaker: Elisa Marion Billard, epfl
- 📅 Date & Time: Tuesday 07 April 2026, 17:00 - 17:30
- 📍 Venue: LT1
Abstract
Traditional cancer diagnostics depend on time-consuming chemical staining that can delay critical surgical decisions. As part of the EU-funded CHARM project, this talk introduces a “virtual staining” pipeline that uses 38-channel broadband Stimulated Raman Scattering (SRS) microscopy to generate label-free histological images. By implementing a high-precision registration framework, we transitioned from unsupervised style transfer to a supervised deep learning approach (U-Net and CycleGAN). Our results show that while standard models provide high structural accuracy, hybrid adversarial models produce superior visual clarity and sharper cellular details. We further evaluate these virtual stains using automated nuclei segmentation (Cellpose), revealing a key divergence between human and algorithmic interpretability. This research demonstrates a chemically-grounded path for rapid, non-destructive morphological feedback in intraoperative settings, bypassing the logistical bottlenecks of conventional pathology.
Series This talk is part of the Data Science and AI in Medicine series.
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Tuesday 07 April 2026, 17:00-17:30