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SUMMARY:Ensembl Plants: Visualising\, mining and analysing crop genomics d
 ata - Dan Bolser\, Ensembl Plants Project Leader\, EMBL-EBI 
DTSTART:20141119T130000Z
DTEND:20141119T140000Z
UID:TALK56353@talks.cam.ac.uk
CONTACT:Krys Kelly
DESCRIPTION:Ensembl Plants is a genome centric platform for visualisation 
 and analysis of plant genomics data. It hosts assembly\, sequence\, expres
 sion\, variation and comparative datasets for a growing number of plant sp
 ecies (currently 38) covering a range of economically important crops\, in
 cluding sorghum\, brassica\, tomato\, barley\, potato\, rice\, wheat and m
 aize\, and taxonomically diverse model organisms such as arabidopsis\, amb
 orella\, chlamydomonas\, and physcomitrella. The web-based genome browser 
 visually integrates sequence and assembly information with genes\, markers
 \, probes\, variations\, repeats and other public or user-supplied dataset
 s. It includes a web-based data mining tool\, allowing specific sets of da
 ta to be queried and downloaded for offline analysis. In addition to the b
 rowser\, all data can be accessed computationally via extensive Perl and R
 EST APIs and is available for FTP download or direct database access. In a
 ddition to the public datasets provided within the browser\, users can upl
 oad or 'attach' various types of private data\, allowing your own annotati
 on to be browsed in the context of the reference sequence and annotation. 
LOCATION:Large Lecture Theatre\, Department of Plant Sciences
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