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SUMMARY:Interacting-Particle Reaction-Diffusion Simulations: Endocytosis -
  Frank Noe (Freie Universität Berlin)
DTSTART:20160621T100000Z
DTEND:20160621T104500Z
UID:TALK66531@talks.cam.ac.uk
CONTACT:INI IT
DESCRIPTION:We have introduced interacting-particle reaction-diffusion (iP
 RD) simulations  as a hybrid between molecular dynamics simulations and pa
 rticle-based  reaction-diffusion simulations. iPRD is a suitable modeling 
 framework for many  cellular signaling processes\, especially such process
 es involving dense protein  mixtures\, supramolecular architectures or pro
 tein scaffolds at membranes. I will  introduce to the theory behind iPRD a
 nd present computational algorithms. <br> <br>One of our key application a
 reas is clathrin-mediated endocytosis in neurons\,  and I will briefly elu
 de to simulations of protein recruitment to  clathrin-coated pits and the 
 interplay between membrane-associated proteins and  membrane deformation i
 n endocytosis. <br><br>Related Links <ul> <li><a target="_blank" rel="nofo
 llow">http://readdy-project.org</a></li></ul>
LOCATION:Seminar Room 1\, Newton Institute
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